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Sample GSM1830184 Query DataSets for GSM1830184
Status Public on Jul 23, 2015
Title WB_statin_pt_9
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): Y
disease: COPD
age: 65
Sex: M
smoking status: Former smoker
fev1% predicted: 30
fev1/fvc: 35.84
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.770884141
7892504 9.116067914
7892507 6.929345336
7892508 7.080954433
7892509 8.825305304
7892510 5.898471322
7892514 9.556108665
7892515 10.19699689
7892516 5.599615268
7892517 8.448885764
7892520 9.593325444
7892521 9.55847466
7892527 7.795162447
7892530 8.72036169
7892531 8.550825127
7892533 7.430242467
7892534 7.091519926
7892535 7.382759334
7892536 10.92309012
7892538 7.209465847

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830184_S353.CEL.gz 4.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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