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Sample GSM1830181 Query DataSets for GSM1830181
Status Public on Jul 23, 2015
Title WB_non-statin_pt_19
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: COPD
age: 68
Sex: M
smoking status: Former smoker
fev1% predicted: 65.9
fev1/fvc: 43.85
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.558749859
7892504 9.154003363
7892507 7.00591682
7892508 7.763099903
7892509 9.060473007
7892510 6.673416557
7892514 10.10971883
7892515 10.44834319
7892516 5.696420462
7892517 8.465453281
7892520 9.42387473
7892521 9.22294909
7892527 8.413283153
7892530 8.85254765
7892531 8.594344671
7892533 6.986745451
7892534 7.821205289
7892535 7.275504527
7892536 11.67264318
7892538 7.110519475

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830181_S444.CEL.gz 4.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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