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Sample GSM1830178 Query DataSets for GSM1830178
Status Public on Jul 23, 2015
Title WB_non-statin_pt_17
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: Control
age: 63
Sex: F
smoking status: Former smoker
fev1% predicted: 119.2
fev1/fvc: 93.01
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.883916653
7892504 9.233963182
7892507 6.975451657
7892508 7.780875454
7892509 9.267425373
7892510 7.007422158
7892514 9.887422726
7892515 10.14023394
7892516 5.67420761
7892517 8.360889653
7892520 9.479529333
7892521 9.598124533
7892527 8.439216306
7892530 8.703626142
7892531 8.640127864
7892533 6.942490157
7892534 7.396047502
7892535 7.370628128
7892536 11.46784775
7892538 7.080265033

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830178_S304.CEL.gz 4.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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