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Sample GSM1830173 Query DataSets for GSM1830173
Status Public on Jul 23, 2015
Title WB_non-statin_pt_12
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: COPD
age: 71
Sex: F
smoking status: Former smoker
fev1% predicted: 73.7
fev1/fvc: 71.87
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.872654235
7892504 9.079139621
7892507 7.291956871
7892508 7.631044091
7892509 9.475082431
7892510 6.33485678
7892514 10.12308364
7892515 9.929228009
7892516 5.879061611
7892517 8.445663603
7892520 9.311688351
7892521 9.295910827
7892527 8.490608236
7892530 8.873944482
7892531 8.695635905
7892533 7.026980624
7892534 7.927085549
7892535 6.721694016
7892536 12.0703459
7892538 7.079041266

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830173_S913.CEL.gz 4.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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