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Sample GSM1830163 Query DataSets for GSM1830163
Status Public on Jul 23, 2015
Title WB_statin_pt_4
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): Y
disease: COPD
age: 60
Sex: M
smoking status: Former smoker
fev1% predicted: 31.9
fev1/fvc: 28.97
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.674337773
7892504 9.329762379
7892507 7.105050096
7892508 7.39575609
7892509 9.280964639
7892510 6.975084949
7892514 9.832456217
7892515 10.39746767
7892516 5.696685608
7892517 8.412123734
7892520 9.969946647
7892521 9.468878932
7892527 8.111967914
7892530 8.347173356
7892531 8.052876994
7892533 6.997437497
7892534 7.795148008
7892535 8.738566325
7892536 10.82524197
7892538 7.32393559

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830163_S545.CEL.gz 4.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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