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Sample GSM1830162 Query DataSets for GSM1830162
Status Public on Jul 23, 2015
Title WB_non-statin_pt_3
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: COPD
age: 67
Sex: F
smoking status: Former smoker
fev1% predicted: 75.1
fev1/fvc: 43.07
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.686292519
7892504 9.424245209
7892507 6.463980661
7892508 7.594289034
7892509 8.811336022
7892510 6.51309526
7892514 9.917699513
7892515 10.25014148
7892516 5.705729868
7892517 8.320626827
7892520 9.050844116
7892521 9.492309202
7892527 8.34435673
7892530 8.853135238
7892531 8.152955726
7892533 7.180598764
7892534 7.240137581
7892535 6.778428836
7892536 11.50605607
7892538 6.852900435

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830162_S497.CEL.gz 4.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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