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Sample GSM1830161 Query DataSets for GSM1830161
Status Public on Jul 23, 2015
Title WB_statin_pt_3
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): Y
disease: Control
age: 62
Sex: M
smoking status: Former smoker
fev1% predicted: 109.2
fev1/fvc: 76.93
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.728839538
7892504 9.356592365
7892507 6.524686176
7892508 7.845681291
7892509 9.107759992
7892510 6.739446322
7892514 10.17268101
7892515 10.007902
7892516 5.78065082
7892517 8.20516408
7892520 9.007042985
7892521 9.381841406
7892527 8.270019141
7892530 8.993354362
7892531 8.540590104
7892533 7.068371994
7892534 7.66254921
7892535 7.441247655
7892536 11.68019655
7892538 7.087001623

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830161_S514.CEL.gz 4.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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