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Sample GSM1830158 Query DataSets for GSM1830158
Status Public on Jul 23, 2015
Title WB_statin_pt_1
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): Y
disease: COPD
age: 72
Sex: M
smoking status: Former smoker
fev1% predicted: 54
fev1/fvc: 48.21
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.527999535
7892504 9.531751863
7892507 7.183870983
7892508 7.419099333
7892509 9.059278828
7892510 6.824092187
7892514 10.19453575
7892515 9.991736415
7892516 5.682651189
7892517 8.31371589
7892520 9.545144508
7892521 9.235873855
7892527 8.201949192
7892530 8.755239131
7892531 8.662543047
7892533 6.841267866
7892534 7.853669225
7892535 8.011578288
7892536 11.46836632
7892538 7.130673154

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830158_S277.CEL.gz 4.7 Mb (ftp)(http) CEL
Processed data included within Sample table

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