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Sample GSM1825644 Query DataSets for GSM1825644
Status Public on Aug 31, 2016
Title C_38736_27
Sample type RNA
Source name prostate cancer
Organism Homo sapiens
Characteristics gleason_score: 4+3
ethnicity: African-American
Extracted molecule total RNA
Extraction protocol RNA was extracted following the manufacturer's recommendations.
Label cy3
Label protocol The cRNA labeling was performed according to Protocol from Agilent Technologies Inc. (Santa Clara, CA) using the Agilent Quick Amp Labeling Kit (Agilent Technologies, Palo Alto, CA) following the two-colour manufacturer's protocol.
Hybridization protocol cRNA samples were hybridized to an Agilent Technologies Human Gene Expression 8x60K Microarray Agilent Technologies). The hybridization slides were washed, stabilized, dried, and immediately scanned.
Scan protocol Scanned with an Agilent Technologies Microarray Scanner using default parameters. Each sample represents one channel of a dual-channel array.
Data processing Expression arrays were processed using BioConductor (one color arrays, Quantile normalization). Also we combated the dataset by patient (as the “batch” variable).
Submission date Jul 16, 2015
Last update date Aug 31, 2016
Contact name Chad Creighton
Organization name Baylor College of Medicine
Department Biostatistics, Ducan Cancer Center
Street address One Baylor Plaza, Mail Stop: BCM305
City Houston
State/province TX
ZIP/Postal code 77030
Country USA
Platform ID GPL16699
Series (1)
GSE71016 Gene expression profiling of African-American prostate cancer

Data table header descriptions
VALUE 'signal' a measure of the abundance of a transcript

Data table
1 41635.51732
2 9.920527664
3 5.975065538
4 1749.92509
5 58.17751674
6 11.24080315
7 9.920527664
8 19.26489993
9 22831.57072
10 314.9784876
11 26.64596339
12 3911.133827
13 162.4202352
14 19.26489993
15 15.23580999
16 11.24080315
17 104.4056721
18 88.61683713
19 200.5076138
20 2095.308585

Total number of rows: 62976

Table truncated, full table size 1087 Kbytes.

Supplementary file Size Download File type/resource
GSM1825644_C_38736_27.txt.gz 3.0 Mb (ftp)(http) TXT
Processed data included within Sample table

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