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Sample GSM1825634 Query DataSets for GSM1825634
Status Public on Aug 31, 2016
Title C_31704_19
Sample type RNA
Source name prostate cancer
Organism Homo sapiens
Characteristics gleason_score: 3+3
ethnicity: African-American
Extracted molecule total RNA
Extraction protocol RNA was extracted following the manufacturer's recommendations.
Label cy3
Label protocol The cRNA labeling was performed according to Protocol from Agilent Technologies Inc. (Santa Clara, CA) using the Agilent Quick Amp Labeling Kit (Agilent Technologies, Palo Alto, CA) following the two-colour manufacturer's protocol.
Hybridization protocol cRNA samples were hybridized to an Agilent Technologies Human Gene Expression 8x60K Microarray Agilent Technologies). The hybridization slides were washed, stabilized, dried, and immediately scanned.
Scan protocol Scanned with an Agilent Technologies Microarray Scanner using default parameters. Each sample represents one channel of a dual-channel array.
Data processing Expression arrays were processed using BioConductor (one color arrays, Quantile normalization). Also we combated the dataset by patient (as the “batch” variable).
Submission date Jul 16, 2015
Last update date Apr 23, 2018
Contact name Chad Creighton
Organization name Baylor College of Medicine
Department Biostatistics, Ducan Cancer Center
Street address One Baylor Plaza, Mail Stop: BCM305
City Houston
State/province TX
ZIP/Postal code 77030
Country USA
Platform ID GPL16699
Series (1)
GSE71016 Gene expression profiling of African-American prostate cancer
Reanalyzed by GSE113533

Data table header descriptions
VALUE 'signal' a measure of the abundance of a transcript

Data table
1 41547.45907
2 13.56107978
3 25.80130324
4 2358.638682
5 45.61440994
6 22.51732328
7 13.56107978
8 16.36686134
9 5207.124119
10 407.4590701
11 10.95444195
12 5069.090138
13 139.4420798
14 17.8619935
15 8.304299732
16 2.255118134
17 91.39110897
18 82.72120606
19 96.32314781
20 2096.328002

Total number of rows: 62976

Table truncated, full table size 1090 Kbytes.

Supplementary file Size Download File type/resource
GSM1825634_C_31704_19.txt.gz 3.0 Mb (ftp)(http) TXT
Processed data included within Sample table

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