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Sample GSM1825614 Query DataSets for GSM1825614
Status Public on Aug 31, 2016
Title B_59314_82
Sample type RNA
 
Source name benign
Organism Homo sapiens
Characteristics gleason_score: 4+3
ethnicity: African-American
Extracted molecule total RNA
Extraction protocol RNA was extracted following the manufacturer's recommendations.
Label cy3
Label protocol The cRNA labeling was performed according to Protocol from Agilent Technologies Inc. (Santa Clara, CA) using the Agilent Quick Amp Labeling Kit (Agilent Technologies, Palo Alto, CA) following the two-colour manufacturer's protocol.
 
Hybridization protocol cRNA samples were hybridized to an Agilent Technologies Human Gene Expression 8x60K Microarray Agilent Technologies). The hybridization slides were washed, stabilized, dried, and immediately scanned.
Scan protocol Scanned with an Agilent Technologies Microarray Scanner using default parameters. Each sample represents one channel of a dual-channel array.
Data processing Expression arrays were processed using BioConductor (one color arrays, Quantile normalization). Also we combated the dataset by patient (as the “batch” variable).
 
Submission date Jul 16, 2015
Last update date Apr 23, 2018
Contact name Chad Creighton
E-mail(s) creighto@bcm.tmc.edu
Organization name Baylor College of Medicine
Department Biostatistics, Ducan Cancer Center
Street address One Baylor Plaza, Mail Stop: BCM305
City Houston
State/province TX
ZIP/Postal code 77030
Country USA
 
Platform ID GPL16699
Series (1)
GSE71016 Gene expression profiling of African-American prostate cancer
Relations
Reanalyzed by GSE113533

Data table header descriptions
ID_REF
VALUE 'signal' a measure of the abundance of a transcript

Data table
ID_REF VALUE
1 36183.20179
2 10.81851962
3 13.03199606
4 2758.289167
5 48.08528373
6 16.30375455
7 17.48821049
8 23.03188639
9 599.2163517
10 327.0804294
11 28.2503323
12 4087.711497
13 154.4954779
14 16.95665715
15 16.30375455
16 17.2212202
17 80.3862546
18 94.10955558
19 630.852274
20 2850.760041

Total number of rows: 62976

Table truncated, full table size 1090 Kbytes.




Supplementary file Size Download File type/resource
GSM1825614_B_59314_82.txt.gz 3.1 Mb (ftp)(http) TXT
Processed data included within Sample table

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