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Sample GSM1825606 Query DataSets for GSM1825606
Status Public on Aug 31, 2016
Title B_53247_60
Sample type RNA
 
Source name benign
Organism Homo sapiens
Characteristics gleason_score: 4+4
ethnicity: African-American
Extracted molecule total RNA
Extraction protocol RNA was extracted following the manufacturer's recommendations.
Label cy3
Label protocol The cRNA labeling was performed according to Protocol from Agilent Technologies Inc. (Santa Clara, CA) using the Agilent Quick Amp Labeling Kit (Agilent Technologies, Palo Alto, CA) following the two-colour manufacturer's protocol.
 
Hybridization protocol cRNA samples were hybridized to an Agilent Technologies Human Gene Expression 8x60K Microarray Agilent Technologies). The hybridization slides were washed, stabilized, dried, and immediately scanned.
Scan protocol Scanned with an Agilent Technologies Microarray Scanner using default parameters. Each sample represents one channel of a dual-channel array.
Data processing Expression arrays were processed using BioConductor (one color arrays, Quantile normalization). Also we combated the dataset by patient (as the “batch” variable).
 
Submission date Jul 16, 2015
Last update date Apr 23, 2018
Contact name Chad Creighton
E-mail(s) creighto@bcm.tmc.edu
Organization name Baylor College of Medicine
Department Biostatistics, Ducan Cancer Center
Street address One Baylor Plaza, Mail Stop: BCM305
City Houston
State/province TX
ZIP/Postal code 77030
Country USA
 
Platform ID GPL16699
Series (1)
GSE71016 Gene expression profiling of African-American prostate cancer
Relations
Reanalyzed by GSE113533

Data table header descriptions
ID_REF
VALUE 'signal' a measure of the abundance of a transcript

Data table
ID_REF VALUE
1 25504.94936
2 7.920941118
3 7.018396427
4 1435.745478
5 48.8862546
6 8.79933369
7 11.45924657
8 17.15325906
9 8689.813439
10 334.2017886
11 18.22121416
12 2827.090138
13 208.5949925
14 15.23580999
15 14.73581021
16 24.87169169
17 102.8085847
18 82.99305072
19 48.3085847
20 2123.556158

Total number of rows: 62976

Table truncated, full table size 1085 Kbytes.




Supplementary file Size Download File type/resource
GSM1825606_B_53247_60.txt.gz 3.0 Mb (ftp)(http) TXT
Processed data included within Sample table

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