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Sample GSM176482 Query DataSets for GSM176482
Status Public on May 16, 2007
Title Small RNAs from Chlamydomonas reinhardtii whole extracts
Sample type SRA
 
Source name whole extracts, Chlamydomonas reinhardtii
Organism Chlamydomonas reinhardtii
Characteristics whole extracts, Chlamydomonas reinhardtii
Extracted molecule total RNA
Extraction protocol Small RNAs were extracted by Trizol reagent and further purified by denaturing polyacrylamide gel
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection other
Instrument model 454 GS
 
Description Total small RNAs from Chlamydomonas reinhardtii
Data processing The small RNA sequences were mapped to the Chlamydomonas reinhardtii genome by using Perl scripts
 
Submission date Mar 19, 2007
Last update date Jun 11, 2013
Contact name Yijun Qi
E-mail(s) qiyijun@nibs.ac.cn
Phone 86-10-80727837
Fax 86-10-80727873
URL http://www.nibs.ac.cn/?act=view&id=726
Organization name National Institute of Biological Sciences, Beijing
Street address No.7 Science Park Road,Zhongguancun Life Science Park
City Beijing
ZIP/Postal code 102206
Country China
 
Platform ID GPL9421
Series (1)
GSE7308 Small RNAs in Chlamydomonas reinhardtii
Relations
BioSample SAMN02195382

Data table header descriptions
SEQUENCE Sequence of small RNA (in DNA)
COUNT Number of times small RNA was sequenced

Data table
SEQUENCE COUNT
AAAAAACCGGTGTTTCTCAACACCA 1
AAAAACCGGTGTTTCTCAACACCA 1
AAAAAGCCCTATGTTTGCT 1
AAAAATGCGTGTGCCGCGCT 1
AAAAGCTACCGGATGTCCCGAG 2
AAAAGGTTGCGCGGCCATC 0
AAAAGGTTGCGCGGCCATCG 8
AAAAGGTTGCGCGGCCATCGT 1
AAAAGGTTGCGCGGCCATCGTG 0
AAAAGGTTGCGCGGCCATCGTGT 1
AAAAGTAGTGGTATTTCA 1
AAAATCGCGCCTATAGAGCCC 1
AAAATGTGCATGATGCAT 1
AAACCGATTGGTGATCCCACG 2
AAACCGTGCATATTGCCC 1
AAACCGTGCATATTGCCCTGT 1
AAACCGTGCATATTGCCCTGTA 1
AAACCGTGCATATTGCCCTGTAA 6
AAACCGTGCATATTGCCCTGTAAG 1
AAACCTCCGAGTGAGTTGGG 2

Total number of rows: 4182

Table truncated, full table size 95 Kbytes.




Supplementary data files not provided
Raw data not applicable for this record

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