NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1754842 Query DataSets for GSM1754842
Status Public on Apr 01, 2016
Title time point 20 experiment 1 arrested cells
Sample type SRA
 
Source name time point 20 arrested cells
Organism Schizosaccharomyces pombe
Characteristics protocol: arrested
time: 20 min
Extracted molecule total RNA
Extraction protocol Hot phenol RNA extraction
RNA libraries were prepared for sequencing using standard Illumina protocols
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2000
 
Description 20A exp1
Data processing Mapping with Tophat to S.pombe reference genome, with default parameters, tophat/2.0.8b
Counts generated with htseq, htseq/0.5.3p3
Differential expression analysis performed with DESeq2
Genome_build: EF2 (ASM294v2)
Supplementary_files_format_and_content: tab-delimited text file including raw counts for each sample
 
Submission date Jul 01, 2015
Last update date May 15, 2019
Contact name Zsolt Szilagyi
Organization name University of Gothenburg
Street address Medicinaregatan 9A
City Gothenburg
ZIP/Postal code 41390
Country Sweden
 
Platform ID GPL13988
Series (2)
GSE70435 RNAseq measurments of gene expression during simultanous replication and mitosis using the S. Pombe minimal cell cycle strain
GSE70717 Cdk1 activity levels drive periodic transcription independently of cell cycle progression
Relations
BioSample SAMN03835456
SRA SRX1078764

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap