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Sample GSM1754837 Query DataSets for GSM1754837
Status Public on Apr 01, 2016
Title time point 0 experiment 2
Sample type SRA
Source name time point 0
Organism Schizosaccharomyces pombe
Characteristics protocol: control
time: 0 min
Extracted molecule total RNA
Extraction protocol Hot phenol RNA extraction
RNA libraries were prepared for sequencing using standard Illumina protocols
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2000
Description 0 exp2
Data processing Mapping with Tophat to S.pombe reference genome, with default parameters, tophat/2.0.8b
Counts generated with htseq, htseq/0.5.3p3
Differential expression analysis performed with DESeq2
Genome_build: EF2 (ASM294v2)
Supplementary_files_format_and_content: tab-delimited text file including raw counts for each sample
Submission date Jul 01, 2015
Last update date May 15, 2019
Contact name Zsolt Szilagyi
Organization name University of Gothenburg
Street address Medicinaregatan 9A
City Gothenburg
ZIP/Postal code 41390
Country Sweden
Platform ID GPL13988
Series (2)
GSE70435 RNAseq measurments of gene expression during simultanous replication and mitosis using the S. Pombe minimal cell cycle strain
GSE70717 Cdk1 activity levels drive periodic transcription independently of cell cycle progression
BioSample SAMN03835451
SRA SRX1078759

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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