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Sample GSM171831 Query DataSets for GSM171831
Status Public on Apr 05, 2007
Title Hubrecht/NIOB Ketting zebrafish testis piRNAs
Sample type SRA
 
Source name freshly dissected zebrafish testes
Organism Danio rerio
Characteristics Strain: TL, male, average age - 6 months
Extracted molecule total RNA
Extraction protocol total RNA, ~25-30 nt RNAs isolated using PAGE
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection other
Instrument model 454 GS
 
Description small RNA
Data processing adapter sequences were trimmed and inserts mapped to the zebrafish genome (Zv6 assembly).
 
Submission date Feb 26, 2007
Last update date Jun 11, 2013
Contact name Eugene Berezikov
E-mail(s) e.berezikov@umcg.nl
Phone +31 50 361 73 00
Organization name University Medical Center Groningen
Department European Research Institute for the Biology of Ageing
Street address Antonius Deusinglaan 1
City Groningen
ZIP/Postal code 9713AV
Country Netherlands
 
Platform ID GPL11102
Series (1)
GSE7131 Zebrafish germline small RNAs
Relations
BioSample SAMN02195381

Data table header descriptions
SEQUENCE
COUNT

Data table
SEQUENCE COUNT
TGGTTAGTACTTGGATGGGAGACCGCCTGGG 0
GTTAGTACTTGGATGGGAGACCGCCTGGGAA 0
AGTACTTGGATGGGAGACCGCCTGGGAATA 0
TAGTACTTGGATGGGAGACCGCCTGGGAAT 0
TTGGATGGGAGACCGCCTGGGAATACCAG 0
GTACTTGGATGGGAGACCGCCTGGGAATA 0
AGTACTTGGATGGGAGACCGCCTGGGAAT 0
TTGGATGGGAGACCGCCTGGGAATACCGG 0
TGGTTAGTACTTGGATGGGAGACCGCCTG 0
TTGGATGGGAGACCGCCTGGGAATACCAA 0
GGTTAGTACTTGGATGGGAGACCGCCTG 0
ACTTGGATGGGAGACCGCCTGGGAATAC 0
TTGGATGGGAGACCGCCTGGGAATACCA 0
TTGGATGGGAGACCGCCTGGGAATACCT 0
AGTACTTGGATGGGAGACCGCCTGGGAA 1
CTGGATGGGAGACCGCCTGGGAATACC 0
TACTTGGATGGGAGACCGCCTGGGAAT 0
TTGGATGGGAGACCGCCTGGGAATACC 0
TTGGATGGGAGACCGCCTGGGAATACT 0
ACTTGGATGGGAGACCGCCTGGGAATA 0

Total number of rows: 89240

Table truncated, full table size 2616 Kbytes.




Supplementary data files not provided
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