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Sample GSM1718002 Query DataSets for GSM1718002
Status Public on Jan 15, 2016
Title pdx gapmer3 rep2
Sample type RNA
 
Source name patient derived xenograft
Organism Homo sapiens
Characteristics treatment: gapmer3
tissue type: patient derived melanoma xenograft
Treatment protocol Mice were treated with a control gapmer of GapmeR3 targeting LINC01212
Extracted molecule total RNA
Extraction protocol RNA was extracted using the miRNeasy mini kit (Qiagen)
Label Cy3
Label protocol Total RNA (100ng) was labeled using the low input Quick Amp WT labeling kit (Agilent Technologies) according to the manufacturer’s instructions.
 
Hybridization protocol Labeled RNA was hybridized to a Agilent human gene expression microarray according to the manufacturer's instructions.
Scan protocol Arrays were scanned using the Agilent G2565CA Microarray Scanner and Scan Control Software 8.5 according to the manufacturer's instructions.
Data processing Probe intensities were extracted using Feature Extraction software (Agilent).
 
Submission date Jun 23, 2015
Last update date Jan 15, 2016
Contact name Pieter mestdagh
E-mail(s) pieter.mestdagh@ugent.be
Organization name Center for Medical Genetics
Street address De Pintelaan 185
City Gent
ZIP/Postal code 9000
Country Belgium
 
Platform ID GPL17077
Series (2)
GSE70177 Targeting the lineage-specific long non-coding RNA LINC01212 as an effective anti-melanoma therapeutic strategy [2]
GSE70180 Targeting the lineage-specific long non-coding RNA LINC01212 as an effective anti-melanoma therapeutic strategy

Data table header descriptions
ID_REF
VALUE Probe intensities were background corrected and normalized (quantile normalization) using the LIMMA package in R.

Data table
ID_REF VALUE
GE_BrightCorner 17.41611294
DarkCorner 3.631275052
A_23_P117082 11.31058786
A_33_P3246448 8.875568423
A_33_P3318220 3.213257924
A_33_P3236322 4.574705902
A_33_P3319925 7.277643688
A_21_P0000509 14.02861088
A_21_P0000744 8.780346495
A_24_P215804 6.287906941
A_23_P110167 10.5670965
A_33_P3211513 8.150294421
A_23_P103349 5.210483102
A_32_P61480 3.509130389
A_33_P3788124 3.693887479
A_33_P3414202 9.399448797
A_33_P3316686 6.279161373
A_33_P3300975 9.16475886
A_33_P3263061 10.47724893
A_33_P3261373 3.795511031

Total number of rows: 50739

Table truncated, full table size 1258 Kbytes.




Supplementary file Size Download File type/resource
GSM1718002_US45103088_253949441046_S01_GE1_105_Dec08_1_2.txt.gz 3.1 Mb (ftp)(http) TXT
Processed data included within Sample table

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