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Sample GSM1718001 Query DataSets for GSM1718001
Status Public on Jan 15, 2016
Title pdx gapmer3 rep1
Sample type RNA
Source name patient derived xenograft
Organism Homo sapiens
Characteristics treatment: gapmer3
tissue type: patient derived melanoma xenograft
Treatment protocol Mice were treated with a control gapmer of GapmeR3 targeting LINC01212
Extracted molecule total RNA
Extraction protocol RNA was extracted using the miRNeasy mini kit (Qiagen)
Label Cy3
Label protocol Total RNA (100ng) was labeled using the low input Quick Amp WT labeling kit (Agilent Technologies) according to the manufacturer’s instructions.
Hybridization protocol Labeled RNA was hybridized to a Agilent human gene expression microarray according to the manufacturer's instructions.
Scan protocol Arrays were scanned using the Agilent G2565CA Microarray Scanner and Scan Control Software 8.5 according to the manufacturer's instructions.
Data processing Probe intensities were extracted using Feature Extraction software (Agilent).
Submission date Jun 23, 2015
Last update date Jan 15, 2016
Contact name Pieter mestdagh
Organization name Center for Medical Genetics
Street address De Pintelaan 185
City Gent
ZIP/Postal code 9000
Country Belgium
Platform ID GPL17077
Series (2)
GSE70177 Targeting the lineage-specific long non-coding RNA LINC01212 as an effective anti-melanoma therapeutic strategy [2]
GSE70180 Targeting the lineage-specific long non-coding RNA LINC01212 as an effective anti-melanoma therapeutic strategy

Data table header descriptions
VALUE Probe intensities were background corrected and normalized (quantile normalization) using the LIMMA package in R.

Data table
GE_BrightCorner 17.43195043
DarkCorner 4.020828946
A_23_P117082 9.912218318
A_33_P3246448 7.517861673
A_33_P3318220 4.818588312
A_33_P3236322 4.818588312
A_33_P3319925 8.638222634
A_21_P0000509 15.14840142
A_21_P0000744 9.522574956
A_24_P215804 6.836358756
A_23_P110167 11.42077428
A_33_P3211513 8.596487886
A_23_P103349 4.432249212
A_32_P61480 4.778266
A_33_P3788124 4.009683876
A_33_P3414202 9.087748591
A_33_P3316686 7.248422912
A_33_P3300975 8.245800835
A_33_P3263061 9.50569465
A_33_P3261373 4.272768322

Total number of rows: 50739

Table truncated, full table size 1259 Kbytes.

Supplementary file Size Download File type/resource
GSM1718001_US45103088_253949441046_S01_GE1_105_Dec08_1_1.txt.gz 3.1 Mb (ftp)(http) TXT
Processed data included within Sample table

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