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Sample GSM1718000 Query DataSets for GSM1718000
Status Public on Jan 15, 2016
Title pdx control rep4
Sample type RNA
Source name patient derived xenograft
Organism Homo sapiens
Characteristics treatment: control
tissue type: patient derived melanoma xenograft
Treatment protocol Mice were treated with a control gapmer of GapmeR3 targeting LINC01212
Extracted molecule total RNA
Extraction protocol RNA was extracted using the miRNeasy mini kit (Qiagen)
Label Cy3
Label protocol Total RNA (100ng) was labeled using the low input Quick Amp WT labeling kit (Agilent Technologies) according to the manufacturer’s instructions.
Hybridization protocol Labeled RNA was hybridized to a Agilent human gene expression microarray according to the manufacturer's instructions.
Scan protocol Arrays were scanned using the Agilent G2565CA Microarray Scanner and Scan Control Software 8.5 according to the manufacturer's instructions.
Data processing Probe intensities were extracted using Feature Extraction software (Agilent).
Submission date Jun 23, 2015
Last update date Jan 15, 2016
Contact name Pieter mestdagh
Organization name Center for Medical Genetics
Street address De Pintelaan 185
City Gent
ZIP/Postal code 9000
Country Belgium
Platform ID GPL17077
Series (2)
GSE70177 Targeting the lineage-specific long non-coding RNA LINC01212 as an effective anti-melanoma therapeutic strategy [2]
GSE70180 Targeting the lineage-specific long non-coding RNA LINC01212 as an effective anti-melanoma therapeutic strategy

Data table header descriptions
VALUE Probe intensities were background corrected and normalized (quantile normalization) using the LIMMA package in R.

Data table
GE_BrightCorner 16.58033447
DarkCorner 3.804750985
A_23_P117082 10.23049902
A_33_P3246448 7.356544728
A_33_P3318220 4.072961651
A_33_P3236322 4.910731755
A_33_P3319925 8.961922261
A_21_P0000509 16.26672549
A_21_P0000744 9.72327599
A_24_P215804 7.035831392
A_23_P110167 11.05986307
A_33_P3211513 8.010276223
A_23_P103349 4.423184431
A_32_P61480 3.969317621
A_33_P3788124 3.969317621
A_33_P3414202 8.536665911
A_33_P3316686 7.373802693
A_33_P3300975 8.769551307
A_33_P3263061 9.352281299
A_33_P3261373 3.969317621

Total number of rows: 50739

Table truncated, full table size 1262 Kbytes.

Supplementary file Size Download File type/resource
GSM1718000_US45103088_253949441047_S01_GE1_105_Dec08_2_2.txt.gz 3.0 Mb (ftp)(http) TXT
Processed data included within Sample table

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