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Sample GSM1717965 Query DataSets for GSM1717965
Status Public on Jan 15, 2016
Title MM087 gapmer3 rep3
Sample type RNA
Source name short term culture
Organism Homo sapiens
Characteristics treatment: gapmer3
cell type: melanoma short term culture
Treatment protocol Cells were treated with a control gapmer or GapmeR3 targeting LINC01212. Alternatively, LINC01212 was overexpressed.
Extracted molecule total RNA
Extraction protocol RNA was extracted using the miRNeasy mini kit (Qiagen)
Label Cy3
Label protocol Total RNA (100 ng) was labeled using the low input Quick Amp WT labeling kit (Agilent Technologies) according to the manufacturer’s instructions.
Hybridization protocol Labeled RNA was hybridized to a Agilent human gene expression microarray according to the manufacturer's instructions.
Scan protocol Arrays were scanned using the Agilent G2565CA Microarray Scanner and Scan Control Software 8.5 according to the manufacturer's instructions.
Data processing Probe intensities were extracted using Feature Extraction software (Agilent).
Submission date Jun 23, 2015
Last update date Jan 15, 2016
Contact name Pieter mestdagh
Organization name Center for Medical Genetics
Street address De Pintelaan 185
City Gent
ZIP/Postal code 9000
Country Belgium
Platform ID GPL20604
Series (2)
GSE70176 Targeting the lineage-specific long non-coding RNA LINC01212 as an effective anti-melanoma therapeutic strategy [1]
GSE70180 Targeting the lineage-specific long non-coding RNA LINC01212 as an effective anti-melanoma therapeutic strategy

Data table header descriptions
VALUE Probe intensities were background corrected and normalized (quantile normalization) using the LIMMA package in R.

Data table
GE_BrightCorner 15.76074556
DarkCorner 3.817036466
A_33_P3400429 8.829853306
A_33_P3255531 3.675237518
A_24_P940149 5.716719187
A_33_P3306510 12.11689232
CUST_21085_PI427704219 4.162315751
A_33_P3348313 10.72802021
A_33_P3403361 10.61332193
A_33_P3348973 7.049350053
A_23_P11070 3.229041521
A_24_P274615 6.547529747
CUST_1480_PI427704219 4.689109939
CUST_1068_PI427704219 3.4512666
CUST_13414_PI427704219 5.260781991
A_24_P928969 6.580592636
A_23_P100074 10.52287271
A_33_P3227506 6.886463825
CUST_17237_PI427704219 6.51489218
CUST_12234_PI427704219 4.977423639

Total number of rows: 57244

Table truncated, full table size 1613 Kbytes.

Supplementary file Size Download File type/resource
GSM1717965_US45103088_254164810138_S01_GE1_105_Dec08_2_3.txt.gz 3.1 Mb (ftp)(http) TXT
Processed data included within Sample table

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