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Sample GSM1717964 Query DataSets for GSM1717964
Status Public on Jan 15, 2016
Title MM087 gapmer3 rep2
Sample type RNA
Source name short term culture
Organism Homo sapiens
Characteristics treatment: gapmer3
cell type: melanoma short term culture
Treatment protocol Cells were treated with a control gapmer or GapmeR3 targeting LINC01212. Alternatively, LINC01212 was overexpressed.
Extracted molecule total RNA
Extraction protocol RNA was extracted using the miRNeasy mini kit (Qiagen)
Label Cy3
Label protocol Total RNA (100 ng) was labeled using the low input Quick Amp WT labeling kit (Agilent Technologies) according to the manufacturer’s instructions.
Hybridization protocol Labeled RNA was hybridized to a Agilent human gene expression microarray according to the manufacturer's instructions.
Scan protocol Arrays were scanned using the Agilent G2565CA Microarray Scanner and Scan Control Software 8.5 according to the manufacturer's instructions.
Data processing Probe intensities were extracted using Feature Extraction software (Agilent).
Submission date Jun 23, 2015
Last update date Jan 15, 2016
Contact name Pieter mestdagh
Organization name Center for Medical Genetics
Street address De Pintelaan 185
City Gent
ZIP/Postal code 9000
Country Belgium
Platform ID GPL20604
Series (2)
GSE70176 Targeting the lineage-specific long non-coding RNA LINC01212 as an effective anti-melanoma therapeutic strategy [1]
GSE70180 Targeting the lineage-specific long non-coding RNA LINC01212 as an effective anti-melanoma therapeutic strategy

Data table header descriptions
VALUE Probe intensities were background corrected and normalized (quantile normalization) using the LIMMA package in R.

Data table
GE_BrightCorner 15.96494818
DarkCorner 3.726729983
A_33_P3400429 7.432749644
A_33_P3255531 3.657949007
A_24_P940149 4.722162284
A_33_P3306510 11.63659157
CUST_21085_PI427704219 4.334643434
A_33_P3348313 10.60179893
A_33_P3403361 10.54562333
A_33_P3348973 7.380111744
A_23_P11070 3.38933391
A_24_P274615 7.075338309
CUST_1480_PI427704219 4.213084099
CUST_1068_PI427704219 3.09351745
CUST_13414_PI427704219 5.296333188
A_24_P928969 8.531542026
A_23_P100074 10.39423733
A_33_P3227506 6.276890813
CUST_17237_PI427704219 7.05720169
CUST_12234_PI427704219 3.973580034

Total number of rows: 57244

Table truncated, full table size 1616 Kbytes.

Supplementary file Size Download File type/resource
GSM1717964_US45103088_254164810138_S01_GE1_105_Dec08_2_2.txt.gz 3.1 Mb (ftp)(http) TXT
Processed data included within Sample table

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