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Sample GSM1717603 Query DataSets for GSM1717603
Status Public on Jun 24, 2015
Title SpeciesMix_FluidigmC1 Cells 81
Sample type SRA
Source name HEK and 3T3 mix
Organisms Homo sapiens; Mus musculus
Characteristics cell line: HEK and 3T3 mix
Extracted molecule total RNA
Extraction protocol Single cell suspensions were processed through C1 according to manufacturer's instructions
Libraries were prepared from C1-mediated whole transcriptome amplifications using Nextera XT (Illumina)
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina NextSeq 500
Data processing Base calls performed with bcl2fastq2.15
Read 1was aligned with Star v2.4.0
Genome_build: mm10 and hg19 (dual reference)
Supplementary_files_format_and_content: bam file
Submission date Jun 23, 2015
Last update date May 15, 2019
Contact name Evan Macosko
Organization name Harvard Medical School
Department Genetics
Lab McCarroll Lab
Street address 77 Avenue Louis Pasteur, NRB 260
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
Platform ID GPL19415
Series (2)
GSE63473 Highly parallel genome-wide expression profiling of individual cells using nanoliter droplets
GSE70151 C1 analysis using mixtures of human (HEK) and mouse (3T3) cells
BioSample SAMN03785724
SRA SRX1069843

Supplementary file Size Download File type/resource
GSM1717603_G09_human_mouse_star.bam 129.5 Mb (ftp)(http) BAM
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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