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Sample GSM1706488 Query DataSets for GSM1706488
Status Public on Mar 04, 2016
Title BirA
Sample type SRA
Source name J1 ES cell_control
Organism Mus musculus
Characteristics cell type: mouse embryonic stem cells
passages: 5-7
strain: 129S4/SvJae
Extracted molecule polyA RNA
Extraction protocol RNAs were extracted using Qiagen Rneasy plus mini kit
RNA libraries were prepared for sequencing using standard Illumina protocols
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina NextSeq 500
Description Control of Yap1_OE sample
Data processing Sequenced reads were mapped to mm9 whole genome using Tophat2 with default setting
FPKM values were calculated using Cuffdiff with default setting
Genome_build: mm9
Supplementary_files_format_and_content: text file include FPKM values for each Sample. Genes with FPKM value 0 all across the samples are excluded.
Submission date Jun 08, 2015
Last update date May 15, 2019
Contact name Jonghwan Kim
Phone 512-232-8046
Organization name University of Texas at Austin
Department Department of Molecular Cell and Developmental Biology, Institute for Cellular and Molecular Biology
Lab Kim Lab
Street address 2506 Speedway NMS 4.246
City Austin
State/province TX
ZIP/Postal code 78712
Country USA
Platform ID GPL19057
Series (1)
GSE69669 Roles of Yap1 in mouse embryonic stem cells
BioSample SAMN03765222
SRA SRX1053775

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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