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Sample GSM1706471 Query DataSets for GSM1706471
Status Public on Mar 02, 2016
Title 72h rep2
Sample type SRA
 
Source name adenocarcinomic human alveolar basal epithelial cells
Organism Homo sapiens
Characteristics cell line: A549
cell type: adenocarcinomic human alveolar basal epithelial
time point: 72h
Extracted molecule total RNA
Extraction protocol RNA was harvested using Trizol reagent.
RNA libraries were prepared for sequencing using standard Illumina protocols, and Illumina TruSeq RNA Sample Prep Kit was used for library construction.
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2500
 
Description TGF-beta induced EMT
Data processing Reads were mapped to ENSEMBL release 75 transcripts by Bowtie, then TPM values were calculated by RSEM to characterize gene expression profiles.
 
Submission date Jun 08, 2015
Last update date May 15, 2019
Contact name Mengzhu Xue
E-mail(s) xuemz@sari.ac.cn
Organization name Shanghai Advanced Research Institute
Street address No.100, Haike Road
City Shanghai
ZIP/Postal code 201210
Country China
 
Platform ID GPL16791
Series (1)
GSE69667 A systematic analysis of the time series gene expression in TGF-beta induced EMT by Next-generation sequencing
Relations
BioSample SAMN03765219
SRA SRX1053761

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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