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Sample GSM1698254 Query DataSets for GSM1698254
Status Public on Jun 30, 2016
Title Patient 11
Sample type RNA
 
Source name Patient 11
Organism Homo sapiens
Characteristics tissue: blood serum
Stage: patients with FIGO stages III/IV
condition: Ovarian cancer patient
Extracted molecule total RNA
Extraction protocol Small RNAs were isolated using the Macherey-Nagel NucleoSpin® miRNA Plasma kit
Label biotin
Label protocol Small RNAs were labelled with Flash Tag Biotin HSR kit according to manufacter's (Genisphere) recommendations.
 
Hybridization protocol Then samples were hybridized during 16 hours at 48°C on GeneChip microRNA V4 arrays of Affymetrix.
Scan protocol Scan performed with scanner GC30007G (Affymetrix).
Data processing Raw data were normalized using Expression Console (Affymetrix) based on RMA method.
 
Submission date May 28, 2015
Last update date Jun 30, 2016
Contact name Christophe DENOYELLE
E-mail(s) c.denoyelle@baclesse.fr
Phone 332 31 45 51 71
Organization name Université de Caen Normandie
Department Centre de Lutte Contre le Cancer François Baclesse
Lab UMR Inserm 1199 - Unité BioTICLA (Biologie et Thérapies Innovantes des Cancers Localement Agressifs)
Street address 3 Avenue général Harris BP 5026
City Caen cedex 05
ZIP/Postal code 14076
Country France
 
Platform ID GPL19117
Series (1)
GSE69341 Towards a new standardized method for circulating miRNAs profiling in clinical studies: Interest of the exogenous normalization to improve miRNA signature accuracy

Data table header descriptions
ID_REF
VALUE RMA

Data table
ID_REF VALUE
MIMAT0000001_st 2.336846
MIMAT0015091_st 1.233633
MIMAT0000002_st 1.169573
MIMAT0015092_st 1.110899
MIMAT0020301_st 1.468794
MIMAT0000003_st 2.031606
MIMAT0020302_st 1.079733
MIMAT0000004_st 1.225721
MIMAT0000005_st 1.046631
MIMAT0015093_st 1.65411
MIMAT0020303_st 1.213101
MIMAT0000006_st 1.464023
MIMAT0020304_st 1.117331
MIMAT0000007_st 1.203012
MIMAT0015094_st 1.287068
MIMAT0000008_st 1.170259
MIMAT0020305_st 0.8203119
MIMAT0000009_st 0.9102525
MIMAT0020306_st 1.095148
MIMAT0000010_st 13.38087

Total number of rows: 36249

Table truncated, full table size 880 Kbytes.




Supplementary file Size Download File type/resource
GSM1698254_Sample11_miRNA-4_0_.CEL.gz 678.4 Kb (ftp)(http) CEL
Processed data included within Sample table

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