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Sample GSM1698253 Query DataSets for GSM1698253
Status Public on Jun 30, 2016
Title Patient 10
Sample type RNA
Source name Patient 10
Organism Homo sapiens
Characteristics tissue: blood serum
Stage: patients with FIGO stages III/IV
condition: Ovarian cancer patient
Extracted molecule total RNA
Extraction protocol Small RNAs were isolated using the Macherey-Nagel NucleoSpin® miRNA Plasma kit
Label biotin
Label protocol Small RNAs were labelled with Flash Tag Biotin HSR kit according to manufacter's (Genisphere) recommendations.
Hybridization protocol Then samples were hybridized during 16 hours at 48°C on GeneChip microRNA V4 arrays of Affymetrix.
Scan protocol Scan performed with scanner GC30007G (Affymetrix).
Data processing Raw data were normalized using Expression Console (Affymetrix) based on RMA method.
Submission date May 28, 2015
Last update date Jun 30, 2016
Contact name Christophe DENOYELLE
Phone 332 31 45 51 71
Organization name Université de Caen Normandie
Department Centre de Lutte Contre le Cancer François Baclesse
Lab UMR Inserm 1199 - Unité BioTICLA (Biologie et Thérapies Innovantes des Cancers Localement Agressifs)
Street address 3 Avenue général Harris BP 5026
City Caen cedex 05
ZIP/Postal code 14076
Country France
Platform ID GPL19117
Series (1)
GSE69341 Towards a new standardized method for circulating miRNAs profiling in clinical studies: Interest of the exogenous normalization to improve miRNA signature accuracy

Data table header descriptions

Data table
MIMAT0000001_st 2.407886
MIMAT0015091_st 1.121355
MIMAT0000002_st 1.271293
MIMAT0015092_st 1.110899
MIMAT0020301_st 1.04492
MIMAT0000003_st 0.8067538
MIMAT0020302_st 1.242257
MIMAT0000004_st 0.94836
MIMAT0000005_st 1.139515
MIMAT0015093_st 2.73363
MIMAT0020303_st 1.405629
MIMAT0000006_st 0.7383323
MIMAT0020304_st 1.158948
MIMAT0000007_st 1.425262
MIMAT0015094_st 0.92303
MIMAT0000008_st 1.267481
MIMAT0020305_st 1.182255
MIMAT0000009_st 1.21001
MIMAT0020306_st 0.8672609
MIMAT0000010_st 12.57107

Total number of rows: 36249

Table truncated, full table size 881 Kbytes.

Supplementary file Size Download File type/resource
GSM1698253_Sample10_miRNA-4_0_.CEL.gz 680.1 Kb (ftp)(http) CEL
Processed data included within Sample table

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