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Sample GSM1698249 Query DataSets for GSM1698249
Status Public on Jun 30, 2016
Title Patient 6
Sample type RNA
Source name Patient 6
Organism Homo sapiens
Characteristics tissue: blood serum
Stage: patients with FIGO stages III/IV
condition: Ovarian cancer patient
Extracted molecule total RNA
Extraction protocol Small RNAs were isolated using the Macherey-Nagel NucleoSpin® miRNA Plasma kit
Label biotin
Label protocol Small RNAs were labelled with Flash Tag Biotin HSR kit according to manufacter's (Genisphere) recommendations.
Hybridization protocol Then samples were hybridized during 16 hours at 48°C on GeneChip microRNA V4 arrays of Affymetrix.
Scan protocol Scan performed with scanner GC30007G (Affymetrix).
Data processing Raw data were normalized using Expression Console (Affymetrix) based on RMA method.
Submission date May 28, 2015
Last update date Jun 30, 2016
Contact name Christophe DENOYELLE
Phone 332 31 45 51 71
Organization name Université de Caen Normandie
Department Centre de Lutte Contre le Cancer François Baclesse
Lab UMR Inserm 1199 - Unité BioTICLA (Biologie et Thérapies Innovantes des Cancers Localement Agressifs)
Street address 3 Avenue général Harris BP 5026
City Caen cedex 05
ZIP/Postal code 14076
Country France
Platform ID GPL19117
Series (1)
GSE69341 Towards a new standardized method for circulating miRNAs profiling in clinical studies: Interest of the exogenous normalization to improve miRNA signature accuracy

Data table header descriptions

Data table
MIMAT0000001_st 1.675583
MIMAT0015091_st 1.322592
MIMAT0000002_st 1.422147
MIMAT0015092_st 1.428922
MIMAT0020301_st 1.257651
MIMAT0000003_st 1.186433
MIMAT0020302_st 1.220508
MIMAT0000004_st 1.249739
MIMAT0000005_st 0.9539704
MIMAT0015093_st 1.940469
MIMAT0020303_st 0.9648669
MIMAT0000006_st 0.83262
MIMAT0020304_st 1.017388
MIMAT0000007_st 1.097359
MIMAT0015094_st 1.167899
MIMAT0000008_st 0.9003103
MIMAT0020305_st 0.7124518
MIMAT0000009_st 0.731727
MIMAT0020306_st 0.8633674
MIMAT0000010_st 12.03307

Total number of rows: 36249

Table truncated, full table size 881 Kbytes.

Supplementary file Size Download File type/resource
GSM1698249_Sample6_miRNA-4_0_.CEL.gz 683.9 Kb (ftp)(http) CEL
Processed data included within Sample table

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