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Sample GSM1698245 Query DataSets for GSM1698245
Status Public on Jun 30, 2016
Title Patient 2
Sample type RNA
 
Source name Patient 2
Organism Homo sapiens
Characteristics tissue: blood serum
Stage: patients with FIGO stages III/IV
condition: Ovarian cancer patient
Extracted molecule total RNA
Extraction protocol Small RNAs were isolated using the Macherey-Nagel NucleoSpin® miRNA Plasma kit
Label biotin
Label protocol Small RNAs were labelled with Flash Tag Biotin HSR kit according to manufacter's (Genisphere) recommendations.
 
Hybridization protocol Then samples were hybridized during 16 hours at 48°C on GeneChip microRNA V4 arrays of Affymetrix.
Scan protocol Scan performed with scanner GC30007G (Affymetrix).
Data processing Raw data were normalized using Expression Console (Affymetrix) based on RMA method.
 
Submission date May 28, 2015
Last update date Jun 30, 2016
Contact name Christophe DENOYELLE
E-mail(s) c.denoyelle@baclesse.fr
Phone 332 31 45 51 71
Organization name Université de Caen Normandie
Department Centre de Lutte Contre le Cancer François Baclesse
Lab UMR Inserm 1199 - Unité BioTICLA (Biologie et Thérapies Innovantes des Cancers Localement Agressifs)
Street address 3 Avenue général Harris BP 5026
City Caen cedex 05
ZIP/Postal code 14076
Country France
 
Platform ID GPL19117
Series (1)
GSE69341 Towards a new standardized method for circulating miRNAs profiling in clinical studies: Interest of the exogenous normalization to improve miRNA signature accuracy

Data table header descriptions
ID_REF
VALUE RMA

Data table
ID_REF VALUE
MIMAT0000001_st 1.280494
MIMAT0015091_st 1.092636
MIMAT0000002_st 0.9343923
MIMAT0015092_st 1.233633
MIMAT0020301_st 0.6710071
MIMAT0000003_st 1.48807
MIMAT0020302_st 1.195269
MIMAT0000004_st 1.383278
MIMAT0000005_st 1.396908
MIMAT0015093_st 2.254316
MIMAT0020303_st 1.06083
MIMAT0000006_st 0.863
MIMAT0020304_st 0.9589813
MIMAT0000007_st 1.037568
MIMAT0015094_st 1.088352
MIMAT0000008_st 0.8689485
MIMAT0020305_st 0.6897705
MIMAT0000009_st 1.393389
MIMAT0020306_st 0.7701691
MIMAT0000010_st 13.32929

Total number of rows: 36249

Table truncated, full table size 881 Kbytes.




Supplementary file Size Download File type/resource
GSM1698245_Sample2_miRNA-4_0_.CEL.gz 706.0 Kb (ftp)(http) CEL
Processed data included within Sample table

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