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Sample GSM1693918 Query DataSets for GSM1693918
Status Public on Sep 01, 2016
Title 07_RPE1_2d_control_1
Sample type RNA
Source name hTERT-RPE1
Organism Homo sapiens
Characteristics cell line: hTERT-RPE1
sirna: control
day after sirna treatment: Day 2
replica: biological rep 1
Treatment protocol For reverse transfection protocol, cells at 30% confluence were plated in the growth medium into 6-well plates using 15 nM siRNA and 7 µl HiPerFect (Qiagen) in final total volume 2 100 µl.
Growth protocol cells were cultured in media supplemented with penicillin/streptomycin and 10% FBS under standard culture conditions.
Extracted molecule total RNA
Extraction protocol RNA was purified from cells using RNeasy kit (Qiagen)
Label biotin
Label protocol biotin
Hybridization protocol Standard Affymetrix
Scan protocol Standard Affymetrix
Description Gene expression data on 2nd day after control siRNA transfection
Data processing The data were analyzed with RMA method in R. Probe set data extracted from custom CDF (hugene11sthsensgcdf_18.0.0)
Submission date May 21, 2015
Last update date Sep 01, 2016
Contact name Maria Sokolova
Organization name University of Helsinki
Department Institute of Biotechnology
Lab Nuclear Actin Lab
Street address Viikinkaari 5
City Helsinki
ZIP/Postal code 00014
Country Finland
Platform ID GPL20234
Series (2)
GSE69148 Differential response of normal and tumor cells to nucleosome depletion
GSE69149 Histone gene regulation in normal and tumor cells

Data table header descriptions
VALUE log2 RMA signal

Data table
ENSG00000000003_at 8.529044743
ENSG00000000005_at 3.377917864
ENSG00000000419_at 11.00203873
ENSG00000000457_at 7.233792896
ENSG00000000460_at 7.641832839
ENSG00000000938_at 5.31898969
ENSG00000000971_at 8.330241878
ENSG00000001036_at 10.66109353
ENSG00000001084_at 7.537783889
ENSG00000001167_at 9.665705636
ENSG00000001460_at 8.403893862
ENSG00000001461_at 8.901328765
ENSG00000001497_at 9.121581012
ENSG00000001561_at 5.565467795
ENSG00000001617_at 8.075007607
ENSG00000001626_at 3.374843814
ENSG00000001629_at 10.14764823
ENSG00000001631_at 8.453184187
ENSG00000002016_at 6.990860982
ENSG00000002079_at 5.555738906

Total number of rows: 22069

Table truncated, full table size 665 Kbytes.

Supplementary file Size Download File type/resource
GSM1693918_07_RPE1_2d_control_1.CEL.gz 4.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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