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Sample GSM1684 Query DataSets for GSM1684
Status Public on Jul 22, 2002
Title P19 embryonic carcinoma (EC) cells, day 3+3.0
Sample type SAGE
Anchor NlaIII
Tag Count 53022
Tag Length 10
 
Source name P19 EC cells, day 3+3.0
Organism Mus musculus
Extracted molecule total RNA
 
Description SAGE identification of differentiation responsive genes in P19 embryonic cells induced to form cardiomyocytes in vitro.
P19 embryonic carcinoma (EC) cells, induced to form cardiomyocytes in vitro, day 3+3.0 of differentiation protocol. Total number of 54,236 SAGE tags sequenced. 53,022 SAGE tags analyzed after clean-up (extraction of poly(A) tags, linker-generated tags, and tags originated from clones producing 4 tags or less).
Keywords = EC cells, P19, differentiation, cardiomyocytes
 
Submission date May 23, 2002
Last update date Nov 19, 2008
Contact name Kenneth R. Boheler
E-mail(s) bohelerk@grc.nia.nih.gov
Phone 410-558-8189
Fax 410-558-8150
URL http://www.grc.nia.nih.gov/branches/lcs/mcu.htm
Organization name National Institute on Aging, NIH
Department GRC
Lab Laboratory of Cardiovascular Science
Street address 5600 Nathan Shock Drive
City Baltimore
State/province MD
ZIP/Postal code 21224
Country USA
 
Platform ID GPL11
Series (1)
GSE42 P19 embryonic carcinoma (EC) cells induced to form cardiomyocytes in vitro

Data table header descriptions
TAG P19 EC cells, day 3+3.0
COUNT Cleaned-up
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAG 5 94.30
AAAAAAAAAT 1 18.86
AAAAAAACAC 1 18.86
AAAAAAATAG 1 18.86
AAAAAAGAAA 1 18.86
AAAAAAGAGA 1 18.86
AAAAAAGGTG 1 18.86
AAAAAATAAA 3 56.58
AAAAAATAGA 1 18.86
AAAAAATGGG 1 18.86
AAAAAATTGC 1 18.86
AAAAACAGTG 16 301.76
AAAAACATCT 1 18.86
AAAAACCCAG 1 18.86
AAAAACGAGA 1 18.86
AAAAACTCTA 2 37.72
AAAAACTCTG 1 18.86
AAAAACTTTG 1 18.86
AAAAAGAAAT 1 18.86
AAAAAGAAGG 1 18.86

Total number of rows: 20164

Table truncated, full table size 375 Kbytes.




Supplementary data files not provided
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