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Sample GSM1648581 Query DataSets for GSM1648581
Status Public on May 02, 2017
Title Retinoblastoma RB_50-2
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: Retinoblastoma
tissue: Eye
health state: Diseased donor
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2
Submission date Apr 01, 2015
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta

Data table
cg00050873 0.452714958494144 0.000152798136611954
cg00212031 0 0.639485293128076
cg00213748 0.256321594338893 0.0259404654151781
cg00214611 0.383074946108179 0.639485293128076
cg00455876 0.136180963042026 0
cg01707559 0.186198235017084 0
cg02004872 0.114569261721685 0
cg02011394 0.457395352827997 0.000372507925324395
cg02050847 0.213854005638251 0.811994250137324
cg02233190 0.107203196931932 4.79214615645152e-06
cg02494853 0.0211706336857855 0
cg02839557 0.136577299984747 0.309965165843
cg02842889 0 0.996044060231059
cg03052502 0.295010681353624 0.780440145627723
cg03155755 0.45701199400162 2.22932783344731e-13
cg03244189 0.0285782916825461 0
cg03443143 0.499871146281568 0.000206872648157663
cg03683899 0 0.155832115597376
cg03695421 0.0503146261447914 0
cg03706273 0 0

Total number of rows: 485512

Table truncated, full table size 14772 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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