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Sample GSM1648580 Query DataSets for GSM1648580
Status Public on May 02, 2017
Title Retinoblastoma RB_33-2
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: Retinoblastoma
tissue: Eye
health state: Diseased donor
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2
Submission date Apr 01, 2015
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta

Data table
cg00050873 0.493162570014369 0.849858126070718
cg00212031 0.309412794584055 0.734445119622582
cg00213748 0.17690742684575 0.139181732948344
cg00214611 0 0.996511740683105
cg00455876 0.0653839286185439 2.10972641958573e-05
cg01707559 0.223390750032414 0
cg02004872 0 3.5527136788005e-15
cg02011394 0.19110790253721 0.734445119622582
cg02050847 0 0.94322759772849
cg02233190 0.0539808843488904 0.397655784054054
cg02494853 0.00423076060601438 0
cg02839557 0.514297591883394 0.461618988559419
cg02842889 0 0.999769251889075
cg03052502 0 0.969873557454769
cg03155755 0.409747090851081 0.0373271272718902
cg03244189 0.0423215924528073 0
cg03443143 0 0.849858126070718
cg03683899 0.18089645163374 0.5
cg03695421 0.245490606713427 6.40143493768619e-12
cg03706273 0 0

Total number of rows: 485512

Table truncated, full table size 14732 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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