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Sample GSM1648578 Query DataSets for GSM1648578
Status Public on May 02, 2017
Title Retinoblastoma RB_47-2
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: Retinoblastoma
tissue: Eye
health state: Diseased donor
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2
Submission date Apr 01, 2015
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta

Data table
cg00050873 0.00960576025563895 0.965706074927126
cg00212031 0 0.992052213645226
cg00213748 0.345175423951934 0.560312049982156
cg00214611 0.00960576025563895 0.991677166514067
cg00455876 0 0.355329968871958
cg01707559 0.246272107173099 0
cg02004872 0 8.76393409077192e-06
cg02011394 0.0394556520476251 0.336674299509395
cg02050847 0 0.999986906920023
cg02233190 0 0.907662683117195
cg02494853 0.00330268039077091 0
cg02839557 0 0.887642054578097
cg02842889 0 0.997997878192672
cg03052502 0 0.981732442746526
cg03155755 0.287375229609678 0.266345332204498
cg03244189 0 4.18554080283684e-14
cg03443143 0.0373468075826972 0.978487760567447
cg03683899 0 0.874233601026542
cg03695421 0 0.0154495214141134
cg03706273 0 0

Total number of rows: 485512

Table truncated, full table size 14647 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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