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Sample GSM1648574 Query DataSets for GSM1648574
Status Public on May 02, 2017
Title Retinoblastoma RB_46-2
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: Retinoblastoma
tissue: Eye
health state: Diseased donor
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2
Submission date Apr 01, 2015
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta

Data table
cg00050873 0.395603431964682 0.0986177816921795
cg00212031 0.0987109875531531 0.275875312219026
cg00213748 0.0771002295723788 0.53162361863926
cg00214611 0.305888313268554 0.367965965411845
cg00455876 0.168425442857709 1.00544017556103e-11
cg01707559 0.237838250217583 0
cg02004872 0.162802962482431 0
cg02011394 0.454530637427705 0.000112188214455244
cg02050847 0.157205790327809 0.356472389895456
cg02233190 0.156749385501003 0.122003527257557
cg02494853 0.0115232468636734 0
cg02839557 0.486313779528835 0.00242379556845773
cg02842889 0.111695066188426 0.933486932484626
cg03052502 0.303004746784461 0.959571998056375
cg03155755 0.194794632977313 0.196820659870121
cg03244189 0.116330203341566 0
cg03443143 0.304776622609842 0.0205108681839907
cg03683899 0 0.730119160307328
cg03695421 0.0344539249849112 0
cg03706273 0.00259276767532827 0

Total number of rows: 485512

Table truncated, full table size 14776 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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