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Sample GSM1648571 Query DataSets for GSM1648571
Status Public on May 02, 2017
Title Retinoblastoma blood_RB55
Sample type genomic
Source name Blood
Organism Homo sapiens
Characteristics disease state: Retinoblastoma blood
tissue: Blood
health state: Diseased donor
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2
Submission date Apr 01, 2015
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE blood_RB55_pval
cg00050873 0.258980527241314 0.886751483215404
cg00212031 0.264727277222105 0.569239085150728
cg00213748 0.0144135586745896 0.915005603646114
cg00214611 0.405982263708528 0.746290404123593
cg00455876 0.118797193911429 9.08869590698913e-09
cg01707559 0.226267516621449 0
cg02004872 0.160071767082884 0
cg02011394 0.296285339187732 0.653722874723802
cg02050847 0.104111139970133 0.541722930613371
cg02233190 0.0803105834769644 7.61781552527374e-06
cg02494853 0.0217877826400275 0
cg02839557 0 0.715602954459631
cg02842889 0 0.959236044218876
cg03052502 0.255376084039591 0.176099585941518
cg03155755 0.339432253460906 0.000212836892840018
cg03244189 0.184425524975382 0
cg03443143 0.359746006828741 0.0143975488634484
cg03683899 0 0.622119288870071
cg03695421 0.118470085669088 0.00125509030058246
cg03706273 0.0573447664048819 0

Total number of rows: 485512

Table truncated, full table size 14780 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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