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Sample GSM1648563 Query DataSets for GSM1648563
Status Public on May 02, 2017
Title Retinoblastoma blood_RB47
Sample type genomic
Source name Blood
Organism Homo sapiens
Characteristics disease state: Retinoblastoma blood
tissue: Blood
health state: Diseased donor
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2
Submission date Apr 01, 2015
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE blood_RB47_pval
cg00050873 0.340723288831985 0.041423141109561
cg00212031 0.344403879995178 0.198238132513552
cg00213748 0.268445112967622 0.00154758914763165
cg00214611 0.503163845871021 0.275118140621023
cg00455876 0.244116499257989 0
cg01707559 0.25762961866749 0
cg02004872 0.111092363618309 0
cg02011394 0.235447120301169 0.000563325759606714
cg02050847 0.0850295992404636 0.365375036358186
cg02233190 0.0921355858682363 6.00772340808575e-06
cg02494853 0.028760527768276 0
cg02839557 0.160921778411234 0.00477138199006222
cg02842889 0.332165278779174 0.442539510042124
cg03052502 0.253891846998271 0.304785521480741
cg03155755 0.334193516621808 0
cg03244189 0.20614449129768 0
cg03443143 0.375088182709051 0.000243250531647865
cg03683899 0.211375018586612 0.202481697416437
cg03695421 0.273020916900961 2.3595666782672e-06
cg03706273 0.0134687741296241 0

Total number of rows: 485512

Table truncated, full table size 14805 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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