GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1648562 Query DataSets for GSM1648562
Status Public on May 02, 2017
Title Retinoblastoma blood_RB46
Sample type genomic
Source name Blood
Organism Homo sapiens
Characteristics disease state: Retinoblastoma blood
tissue: Blood
health state: Diseased donor
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2
Submission date Apr 01, 2015
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE blood_RB46_pval
cg00050873 0.549546066836583 0.00521493475886958
cg00212031 0.321599057329891 0.0628505578603578
cg00213748 0.427030882545395 0.698307949331743
cg00214611 0.451516803124215 0.579464714484271
cg00455876 0.223818101233281 0
cg01707559 0.210485155911847 0
cg02004872 0.124730825563844 0
cg02011394 0.385590724342953 0.1762623162759
cg02050847 0.0722485507021584 0.528884448664303
cg02233190 0.114698805968076 1.98701086751019e-06
cg02494853 0.0296068376216568 0
cg02839557 0.405687696410485 0.0450053150984091
cg02842889 0.163886968757896 0.484437171070414
cg03052502 0.137952026908471 0.378318060418027
cg03155755 0.414586596331244 4.61053883090701e-05
cg03244189 0.209168473813416 0
cg03443143 0.325545547274067 0.0180237955882965
cg03683899 0.0256246719365354 0.360637447707099
cg03695421 0.0654781642785372 0.00573658723472315
cg03706273 0.029176440953207 0

Total number of rows: 485512

Table truncated, full table size 14806 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap