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Sample GSM1648561 Query DataSets for GSM1648561
Status Public on May 02, 2017
Title Retinoblastoma blood_RB45
Sample type genomic
Source name Blood
Organism Homo sapiens
Characteristics disease state: Retinoblastoma blood
tissue: Blood
health state: Diseased donor
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2
Submission date Apr 01, 2015
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE blood_RB45_pval
cg00050873 0.361611901774196 0.132125797986363
cg00212031 0.344499055601687 0.231890077041181
cg00213748 0.341604884129769 0.1586293673066
cg00214611 0.437632215230164 0.746290404123593
cg00455876 0.19370272736686 3.03939706736145e-09
cg01707559 0.284591310636513 0
cg02004872 0.195826674691325 0
cg02011394 0.458341951433256 0.00303034567371607
cg02050847 0.196128856311192 0.205086644613287
cg02233190 0.0754419493861033 0.000152921209978896
cg02494853 0.0105490690849651 0
cg02839557 0.159912486419791 0.832782567826966
cg02842889 0.071881029365072 0.442139107974268
cg03052502 0.214207214149722 0.541678134574947
cg03155755 0.394332018179394 0.000222370979198194
cg03244189 0.144900730260579 0
cg03443143 0.369499278734268 0.0041475368106435
cg03683899 0.133731520738836 0.365293316812039
cg03695421 0.0487969960095311 0.0254410218529602
cg03706273 0.0105352452318734 0

Total number of rows: 485512

Table truncated, full table size 14834 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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