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Sample GSM1648552 Query DataSets for GSM1648552
Status Public on May 02, 2017
Title Retinoblastoma blood_RB36
Sample type genomic
Source name Blood
Organism Homo sapiens
Characteristics disease state: Retinoblastoma blood
tissue: Blood
health state: Diseased donor
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2
Submission date Apr 01, 2015
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE blood_RB36_pval
cg00050873 0.475416071374696 0.237316816770891
cg00212031 0.379090253402132 0.304111036850271
cg00213748 0.45946114059288 0.0208269203972605
cg00214611 0.532694697933834 0.299408394307947
cg00455876 0.306658468677646 1.39688260958337e-12
cg01707559 0.224096150047564 0
cg02004872 0.218814561053449 6.66133814775094e-16
cg02011394 0.484670597630772 0.000662346134972402
cg02050847 0 0.945981312851888
cg02233190 0.16957841717619 5.11219092624859e-05
cg02494853 0.0245773214054106 0
cg02839557 0.614143037675309 0.186644948309403
cg02842889 0.220316738784055 0.705498323215572
cg03052502 0.0816658073138875 0.388478758552328
cg03155755 0.354168115526058 0.0620440009658022
cg03244189 0.207445737790803 0
cg03443143 0.10985909145054 0.00479817607172772
cg03683899 0.250296967243752 0.30165963126892
cg03695421 0.223904758292578 0.0113595074109271
cg03706273 0.00844012543516479 0

Total number of rows: 485512

Table truncated, full table size 14886 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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