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Sample GSM1648547 Query DataSets for GSM1648547
Status Public on May 02, 2017
Title Retinoblastoma blood_RB31
Sample type genomic
Source name Blood
Organism Homo sapiens
Characteristics disease state: Retinoblastoma blood
tissue: Blood
health state: Diseased donor
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2
Submission date Apr 01, 2015
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta

Data table
ID_REF VALUE blood_RB31_pval
cg00050873 0.373208327323356 0.201333338408099
cg00212031 0.388905576147668 0.30867035564112
cg00213748 0.237355535843543 0.187585097393878
cg00214611 0.285048407116065 0.152864103082207
cg00455876 0.235238454548997 7.7715611723761e-16
cg01707559 0.173823575557126 0
cg02004872 0.131106440305705 0
cg02011394 0.442159925042596 0.215668480812101
cg02050847 0.189493471030515 0.311366212619898
cg02233190 0.0824402542904409 0.000108739605274688
cg02494853 0.0117992531659028 0
cg02839557 0.38544852032025 0.101324956713069
cg02842889 0.309893411378615 0.707991909209462
cg03052502 0.233192809091402 0.504982886760398
cg03155755 0.482767576539509 9.73220307787237e-07
cg03244189 0.26145726010235 0
cg03443143 0.212199983853718 0.00743230242381898
cg03683899 0.0079572478520062 0.350171870951758
cg03695421 0.18734740259806 0.00792619503218916
cg03706273 0.0263447933803104 0

Total number of rows: 485512

Table truncated, full table size 14807 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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