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Sample GSM1648543 Query DataSets for GSM1648543
Status Public on May 02, 2017
Title Uveal melanoma MEL_60 12069
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: Uveal melanoma
tissue: Eye
health state: Diseased donor
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2
Submission date Apr 01, 2015
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta
MEL_60 12069_pval

Data table
ID_REF VALUE MEL_60 12069_pval
cg00050873 0.839958668107124 0.911103594238224
cg00212031 0 0.980625967425641
cg00213748 0 0.989833246428976
cg00214611 0 0.990058074942168
cg00455876 0 0.958024498769318
cg01707559 0 0.0456072605870247
cg02004872 0.264810602632617 0
cg02011394 0.914738536829443 0.848806286354117
cg02050847 0.322441457494245 0.86291121073767
cg02233190 0.0412813681368012 0.0314456374808443
cg02494853 0.00908723690087511 0
cg02839557 0 0.979683785758715
cg02842889 0.53437782183642 0.815759150931071
cg03052502 0 0.967738769782038
cg03155755 0 0.986138740267291
cg03244189 0.183077502297898 0
cg03443143 0.502917140458453 0.945296703083649
cg03683899 0.333571868304029 0.540699277860828
cg03695421 0.119089185172236 0.111968220299098
cg03706273 0.0172044312465295 0

Total number of rows: 485512

Table truncated, full table size 19022 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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