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Sample GSM1648536 Query DataSets for GSM1648536
Status Public on May 02, 2017
Title Uveal melanoma MEL_53 12062
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: Uveal melanoma
tissue: Eye
health state: Diseased donor
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2
Submission date Apr 01, 2015
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta
MEL_53 12062_pval

Data table
ID_REF VALUE MEL_53 12062_pval
cg00050873 0.864797430698212 0.883716415889042
cg00212031 0.328019934205845 0.977888728394149
cg00213748 0 0.970059984807324
cg00214611 0 0.977888728394149
cg00455876 0 0.949919254662355
cg01707559 0.237423469463899 0.000837519183202406
cg02004872 0.347500540176025 1.75415237890775e-13
cg02011394 0.961224660402221 3.53184564406694e-05
cg02050847 0.21321652388889 0.653007513418497
cg02233190 0.138153289045247 0.00628693516104528
cg02494853 0.00444138665369399 0
cg02839557 0 0.981281092061164
cg02842889 0 0.712967755253669
cg03052502 0 0.98083818511873
cg03155755 0 0.979925603259345
cg03244189 0.228137154517494 0
cg03443143 0 0.94790908422767
cg03683899 0.321200960218723 0.123457361502251
cg03695421 0.0669776746706244 5.02123697075918e-05
cg03706273 0 0

Total number of rows: 485512

Table truncated, full table size 16885 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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