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Sample GSM1648534 Query DataSets for GSM1648534
Status Public on May 02, 2017
Title Uveal melanoma MEL_51 12060
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: Uveal melanoma
tissue: Eye
health state: Diseased donor
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2
Submission date Apr 01, 2015
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta
MEL_51 12060_pval

Data table
ID_REF VALUE MEL_51 12060_pval
cg00050873 0.715695585616412 0.6616142608881
cg00212031 0 0.999686080091715
cg00213748 0 0.999580604059065
cg00214611 0 0.976222110363682
cg00455876 0.37509865113991 0.963962337460969
cg01707559 0.144423648602369 7.85371767619836e-13
cg02004872 0.297910999640134 2.72937228373848e-10
cg02011394 0 0.999003978258299
cg02050847 0 0.874233601026542
cg02233190 0.0450346240047511 0.306474634526189
cg02494853 0.0084298172520428 0
cg02839557 0 0.999310826001097
cg02842889 0.0297406852210541 0.897005206990938
cg03052502 0 0.984033781126262
cg03155755 0 0.999487291274178
cg03244189 0.425902571642333 4.06514525375101e-07
cg03443143 0 0.997057945620284
cg03683899 0 0.977151364526254
cg03695421 0.366878601748054 0.140252584606418
cg03706273 0.467592392557623 0

Total number of rows: 485512

Table truncated, full table size 15884 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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