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Sample GSM1648532 Query DataSets for GSM1648532
Status Public on May 02, 2017
Title Uveal melanoma MEL_49 12058
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: Uveal melanoma
tissue: Eye
health state: Diseased donor
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2
Submission date Apr 01, 2015
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta
MEL_49 12058_pval

Data table
ID_REF VALUE MEL_49 12058_pval
cg00050873 0.486952523794017 0.946085156049882
cg00212031 0 0.997636271731531
cg00213748 0 0.904052382802439
cg00214611 0 0.996807143155653
cg00455876 0.197726911716898 0.130474429950913
cg01707559 0.164393032952312 0
cg02004872 0.12731013110875 0
cg02011394 0 0.884437412423088
cg02050847 0 0.914771878192122
cg02233190 0.0391236308769618 0.00154291392184314
cg02494853 0.0105863176448972 0
cg02839557 0 0.999059873772719
cg02842889 0.438924178680866 0.88639096093203
cg03052502 0.676925935128652 0.923236473232207
cg03155755 0.556261127326406 0.955518153324616
cg03244189 0.149743095040233 0
cg03443143 0 0.974998206226026
cg03683899 0.23726274437168 0.879986515819108
cg03695421 0 1.40482565856859e-05
cg03706273 0.00804768670767121 0

Total number of rows: 485512

Table truncated, full table size 15913 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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