GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1648531 Query DataSets for GSM1648531
Status Public on May 02, 2017
Title Uveal melanoma MEL_48 12057
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: Uveal melanoma
tissue: Eye
health state: Diseased donor
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2
Submission date Apr 01, 2015
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta
MEL_48 12057_pval

Data table
ID_REF VALUE MEL_48 12057_pval
cg00050873 0 0.982065780037639
cg00212031 0.73405046897957 0.916238685461085
cg00213748 0 0.987721547296988
cg00214611 0 0.976827955330298
cg00455876 0 0.857227046291551
cg01707559 0.137528927051355 0
cg02004872 0.263923285194889 0
cg02011394 0.830421464976583 0.81906604389395
cg02050847 0.121663868115347 0.512229124244473
cg02233190 0.152489724876041 5.83938318954313e-05
cg02494853 0.00831429450229479 0
cg02839557 0 0.972400239718648
cg02842889 0.519347320007477 0.90106855568123
cg03052502 0.262614892807288 0.94366462931903
cg03155755 0.829131530020596 0.822335488641971
cg03244189 0.270769450475198 0
cg03443143 0.540111959871993 0.480076224085973
cg03683899 0.167191955628195 0.415035426942283
cg03695421 0.419076190585013 0.290523482104642
cg03706273 0.0102245046683765 0

Total number of rows: 485512

Table truncated, full table size 17670 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap