GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1648528 Query DataSets for GSM1648528
Status Public on May 02, 2017
Title Uveal melanoma MEL_45 12054
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: Uveal melanoma
tissue: Eye
health state: Diseased donor
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2
Submission date Apr 01, 2015
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta
MEL_45 12054_pval

Data table
ID_REF VALUE MEL_45 12054_pval
cg00050873 0.641135804574039 0.932990844465912
cg00212031 0 0.970319374802018
cg00213748 0 0.989258890998886
cg00214611 0 0.993631098921453
cg00455876 0.315875513052047 0.522920575842854
cg01707559 0.0810071378723721 9.97831817173278e-11
cg02004872 0.24629410117438 0.000133455947367245
cg02011394 0 0.991866589518533
cg02050847 0.11644194098085 0.42045043311796
cg02233190 0.261032404081061 0.033568139310476
cg02494853 0.0165794485271293 0
cg02839557 0 0.993562072979528
cg02842889 0 0.98894435865314
cg03052502 0 0.991607331071324
cg03155755 0 0.986623020865482
cg03244189 0.259278890460165 1.11022302462516e-15
cg03443143 0 0.954491688391032
cg03683899 0 0.973017440789519
cg03695421 0.215166651792927 0.0223528542218057
cg03706273 0.00577782062907793 0

Total number of rows: 485512

Table truncated, full table size 16405 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap