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Sample GSM1648526 Query DataSets for GSM1648526
Status Public on May 02, 2017
Title Uveal melanoma MEL_43 12052
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: Uveal melanoma
tissue: Eye
health state: Diseased donor
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2
Submission date Apr 01, 2015
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta
MEL_43 12052_pval

Data table
ID_REF VALUE MEL_43 12052_pval
cg00050873 0.757649331570644 0.562752045765529
cg00212031 0 0.959221534753415
cg00213748 0.244826423772317 0.655892753587932
cg00214611 0.616645589189269 0.935173256634049
cg00455876 0.806444186801211 0.140062406577233
cg01707559 0.177553867918384 0
cg02004872 0.21965059865 0
cg02011394 0 0.988167732054005
cg02050847 0 0.938059031111446
cg02233190 0.0993016785858714 0.0117297517234798
cg02494853 0.00734348422515018 0
cg02839557 0 0.986492643453507
cg02842889 0.10485093888448 0.483187299685107
cg03052502 0.98845819208836 0
cg03155755 0.687519882867923 0.926074905273191
cg03244189 0.214330913766017 0
cg03443143 0.541978324103292 0.918633678326563
cg03683899 0 0.967431061341671
cg03695421 0 0.0231934560338657
cg03706273 0.00519657530971555 0

Total number of rows: 485512

Table truncated, full table size 16213 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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