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Sample GSM1648524 Query DataSets for GSM1648524
Status Public on May 02, 2017
Title Uveal melanoma MEL_41 12050
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: Uveal melanoma
tissue: Eye
health state: Diseased donor
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2
Submission date Apr 01, 2015
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta
MEL_41 12050_pval

Data table
ID_REF VALUE MEL_41 12050_pval
cg00050873 0.925310670090617 0.439083470568567
cg00212031 0 0.817116491397417
cg00213748 0 0.913765124436248
cg00214611 0.817553302456999 0.965938392903491
cg00455876 0.787057736244752 3.09752223870419e-14
cg01707559 0.294899093451697 0
cg02004872 0.257195434267829 0
cg02011394 0.96582013670609 0.0271878476782518
cg02050847 0.433874122093961 0.618335434106057
cg02233190 0.187086444188911 2.2732341675713e-08
cg02494853 0.0100923791746978 0
cg02839557 0.0625244187398041 0.838605339272462
cg02842889 0.125654966504491 0.654488725090262
cg03052502 0 0.96708064910467
cg03155755 0.970543980532014 0.000464589433145646
cg03244189 0.269607645951029 0
cg03443143 0.728770424584585 0.353618775074726
cg03683899 0 0.765058266158397
cg03695421 0.273468758721415 0.000285824909420973
cg03706273 0.0103851149105017 0

Total number of rows: 485512

Table truncated, full table size 17578 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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