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Sample GSM1648523 Query DataSets for GSM1648523
Status Public on May 02, 2017
Title Uveal melanoma MEL_40 12049
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: Uveal melanoma
tissue: Eye
health state: Diseased donor
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2
Submission date Apr 01, 2015
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta
MEL_40 12049_pval

Data table
ID_REF VALUE MEL_40 12049_pval
cg00050873 0.950209103445837 0.00385814167565657
cg00212031 0 0.530242799379548
cg00213748 0 0.874233601026542
cg00214611 0 0.954123947586875
cg00455876 0.728406456283811 0.728088375177732
cg01707559 0.157229959927033 0
cg02004872 0.231522653133474 0
cg02011394 0.911495551176465 0
cg02050847 0.381965623809048 0.267453961448118
cg02233190 0.204925007371294 1.49069090404907e-10
cg02494853 0.00664131887945879 0
cg02839557 0.323762166855108 0.50672675326439
cg02842889 0.544510560717178 0.489237990359978
cg03052502 0.20118388326476 0.419822640514759
cg03155755 0.715942769866411 0.693525365473811
cg03244189 0.232855841568615 0
cg03443143 0.920795644000129 0.0700459972856837
cg03683899 0.266762344844942 0.367965965411845
cg03695421 0 1.28101197427455e-07
cg03706273 0.0120579166217154 0

Total number of rows: 485512

Table truncated, full table size 16696 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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