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Sample GSM1648522 Query DataSets for GSM1648522
Status Public on May 02, 2017
Title Uveal melanoma MEL_39 12048
Sample type genomic
Source name Eye
Organism Homo sapiens
Characteristics disease state: Uveal melanoma
tissue: Eye
health state: Diseased donor
Treatment protocol Untreated.
Growth protocol N/A. Primary patient samples.
Extracted molecule genomic DNA
Extraction protocol DNA extracted by Phenol:Chloroform:Isoamylalcohol (Sigma)
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing Genome Studio V2011.2
Submission date Apr 01, 2015
Last update date May 02, 2017
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
Platform ID GPL13534
Series (1)
GSE57362 A DNA methylation atlas of the human eye and its diseases

Data table header descriptions
VALUE Average Beta
MEL_39 12048_pval

Data table
ID_REF VALUE MEL_39 12048_pval
cg00050873 0.166558809731739 0.909675911224416
cg00212031 0 0.976293603766365
cg00213748 0 0.994649811090225
cg00214611 0 0.967639827970566
cg00455876 0 0.906302202212887
cg01707559 0 0.762809464780811
cg02004872 0.243614893895298 8.12531662397475e-07
cg02011394 0.122723364044684 0.937353885082728
cg02050847 0.127213739288818 0.647804965340143
cg02233190 0 0.959894266547628
cg02494853 0.00254192315480869 0
cg02839557 0 0.977685947962875
cg02842889 0.187424080831908 0.949919254662355
cg03052502 0 0.958609205814265
cg03155755 0 0.975570475530274
cg03244189 0 0.00116051394920558
cg03443143 0.54526195080227 0.91925521405839
cg03683899 0 0.925606850205229
cg03695421 0 0.000108156993566255
cg03706273 0.00311299673769891 0

Total number of rows: 485512

Table truncated, full table size 16904 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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